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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001962 Open in IMG/M |
| Scaffold ID | GOS2239_1018667 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Cocos Island, Costa Rica - GS023 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1850 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cocos Island, Costa Rica | |||||||
| Coordinates | Lat. (o) | 5.64 | Long. (o) | -86.56528 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028969 | Metagenome | 190 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| GOS2239_10186672 | F028969 | N/A | VAVAGRTDSHKIDLLEVAYYNQSILDTANANYYSAEHLLVDSYEENMDQMEAAIEMFSGAATEISKAEQIYTEAINAQTEDERIDLQNYIRANDVQIDQSTVQTFNQSLDVIEDKAQAATASLWASQDSATLAMINHDAIATLSNITNSTVAYDAWTDQMTITWDNATDTVLQGVFFNNEGAVGWTQAVSEVYDGFYGDTPPVTVNEMYSAYSYGTGEAVASMGSGYNINAKLYDPVQLIQDVLDVQNETPTTQFNSENGNLGGL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |