NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2229_1011251

Scaffold GOS2229_1011251


Overview

Basic Information
Taxon OID3300001963 Open in IMG/M
Scaffold IDGOS2229_1011251 Open in IMG/M
Source Dataset NameMarine microbial communities from Nags Head, North Carolina, USA - GS013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1409
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNags Head, North Carolina, USA
CoordinatesLat. (o)35.6Long. (o)-75.82Alt. (m)Depth (m)2.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025023Metagenome / Metatranscriptome203N
F037220Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
GOS2229_10112511F025023N/ALRDGSSVETDTQEGKEMTDTFEGRTYDTGVDRTCVLQLQTDFDSLRPHQRAMLKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAVGHLDAACAEQFAVLCRAIRWDEQDIVWNTSTDSFGFPSKENEVSNVR*
GOS2229_10112512F037220GAGGMSDEQDLLAGGGPKLPSLKFEKIGDVHSGIVTDVKKLEDRDPAGVAKTWPNGDPRFVYVITIKTEKEGDANLWARGAMITAIREAAKQASVTELTGNKISVKYSADGEK
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