NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2243_1047128

Scaffold GOS2243_1047128


Overview

Basic Information
Taxon OID3300001965 Open in IMG/M
Scaffold IDGOS2243_1047128 Open in IMG/M
Source Dataset NameMarine microbial communities from Coastal Floreana, Equador - GS028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1762
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameCoastal Floreana, Equador
CoordinatesLat. (o)-1.2169445Long. (o)-90.319725Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069998Metagenome123N

Sequences

Protein IDFamilyRBSSequence
GOS2243_10471285F069998N/AMTKKKLLDLLSAYPDNAEVVIEVHDTSLHEDLYDFYVDGISWTRFNTDNTSEEMHELRLTAINHNES*
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