NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2245_1012064

Scaffold GOS2245_1012064


Overview

Basic Information
Taxon OID3300001966 Open in IMG/M
Scaffold IDGOS2245_1012064 Open in IMG/M
Source Dataset NameMarine microbial communities from Roca Redonda, Equador - GS030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1084
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameRoca Redonda, Equador
CoordinatesLat. (o)0.27222222Long. (o)-91.63333Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077199Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
GOS2245_10120641F077199AGAAGMAIVKQVQKKVIMSKKDIIKFQLITHCYLNKITVSNSDLECLTLLSIIGPLELTHFCYDAAEEHKIFKSQQTVRNCINKCIKSNLIIKDSKNKKLIKINQKLNIETLGTVLLDFKFLAK*

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