Basic Information | |
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Taxon OID | 3300001966 Open in IMG/M |
Scaffold ID | GOS2245_1088391 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Roca Redonda, Equador - GS030 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 815 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
Source Dataset Sampling Location | ||||||||
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Location Name | Roca Redonda, Equador | |||||||
Coordinates | Lat. (o) | 0.27222222 | Long. (o) | -91.63333 | Alt. (m) | Depth (m) | 19 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002594 | Metagenome / Metatranscriptome | 545 | Y |
F066824 | Metagenome / Metatranscriptome | 126 | N |
F084306 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
GOS2245_10883912 | F066824 | N/A | MLVHFKFYRCGYFAEGLVEKDNFDDAAEALWKEHPKTFKWTDIQGPDNENRLTLEEWNEPSGTKTEPEAEPRGAVGL* |
GOS2245_10883913 | F084306 | GGAGG | MSHLEQKLNQKRNLEAQWASKFIANGAVTIEMVQIQKKINEVAQEIKEDSEKKD* |
GOS2245_10883914 | F002594 | GGA | MAKIPTTRLNSAPRDYNEVEFDQLIEDLQDMIEILNSTYPTDISNEQDRKEFFLSG* |
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