Scaffold GOS2245_1090325

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2245_1090325

Scaffold GOS2245_1090325

Overview

Basic Information
Taxon OID	3300001966 Open in IMG/M
Scaffold ID	GOS2245_1090325 Open in IMG/M
Source Dataset Name	Marine microbial communities from Roca Redonda, Equador - GS030
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1000
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Roca Redonda, Equador
Coordinates	Lat. (^o)	0.27222222	Long. (^o)	-91.63333	Alt. (m)		Depth (m)	19
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023367	Metagenome / Metatranscriptome	210	N
F084358	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2245_10903252	F023367	GGAGG	MTKKKFIFEEKFIAYAEVEIYAENEEDARLQFQNGNYQYYDVSDYTEGHELISVKEEEPVNYYQGA*
GOS2245_10903254	F084358	AGGA	MTLIDFDKKELLDISHALLSYRTDSTVIREGGLTDEQKERYKRLTSLIEKVSQLKNVCDCGGQNT*

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