NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GOS2245_1112749

Scaffold GOS2245_1112749


Overview

Basic Information
Taxon OID3300001966 Open in IMG/M
Scaffold IDGOS2245_1112749 Open in IMG/M
Source Dataset NameMarine microbial communities from Roca Redonda, Equador - GS030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1837
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameRoca Redonda, Equador
CoordinatesLat. (o)0.27222222Long. (o)-91.63333Alt. (m)Depth (m)19
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071205Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
GOS2245_11127491F071205N/AIFYIALTLAVFQLIQYLISGSIFSTLLAGLVPFWLWSTRKKILSDLEISGFDQVMSYLVVVYAAFAGLIALLVFVFWLMYASIDPAIIEAALADNPAINDLNEDQLLALDQVMENLPSLLPLLWVFLGLQSFSYLYYGIGVVRKGSSND*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.