NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2242_1047286

Scaffold GOS2242_1047286


Overview

Basic Information
Taxon OID3300001967 Open in IMG/M
Scaffold IDGOS2242_1047286 Open in IMG/M
Source Dataset NameMarine microbial communities from Devil's Crown, Floreana Island, Equador - GS027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2301
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameDevil's Crown, Floreana Island, Equador
CoordinatesLat. (o)-1.2161111Long. (o)-90.422775Alt. (m)Depth (m)2.2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012719Metagenome / Metatranscriptome278Y
F081209Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
GOS2242_10472861F012719N/AMSSDSYIGKTYIMDKYLKWVATLFLMVGVGANSLAIYPAGPLFTLAGGLTWLIVSIMWKEAALITTNLVLSAITVVGLYITYIH*
GOS2242_10472866F081209N/ATLYLKFNDGELEEVLRGVYQIKINPSDKNFLNDLRDELEDNGEDIDKSKTKPGQTITFKSGFQLYLSGRTLSNVIDESGNAVAAKKPTNDQQEDGFIINLKEGKMLENLQINKKIGFQFGKDWYNSFTRSFDAFTSKIIPKKNLSQYEFYRDSDKKKLEMLNQITDPDILPSSKDNWNPSDVWAVKKDEKERLAKEIDKLYTARKKDNNVSIERLNKFIETQFKNKSLIGISLKQVLGNSANVDKITKDAKYIDSVRFLGFKGKMEFDV*
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