NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2216_10146620

Scaffold GOS2216_10146620


Overview

Basic Information
Taxon OID3300001972 Open in IMG/M
Scaffold IDGOS2216_10146620 Open in IMG/M
Source Dataset NameMarine microbial communities from the Sargasso Sea - GS000d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1886
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameSargasso Sea
CoordinatesLat. (o)31.175Long. (o)-64.32433Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061477Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
GOS2216_101466202F061477N/AGKVKGTNDGQEAKKDQELVLYEFIGMLVRIAFQRANPTFGNFGNKKAVVHLPGCLQTMIEDEILPRARKDTSAVFRETVMTEVSVLKVLDEYRPKLKTWYNETTGDDTKQTDLSDKLQMEQWMRICDEKDLVGIWECYRESDITGDPACKTQYKWRLSMPQVKMAFMDSQPSDQVGAAQSSGTDAMSVLDFEEFLETCARLGIDKYRAVKEVDPADAVKGFLQNLLGEKSPDEVVISATYIHAERYAAETEAKPIKGESQKDLDRWLETWARMEIMDVHLWPLWEKEG
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