NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2217_10141974

Scaffold GOS2217_10141974


Overview

Basic Information
Taxon OID3300001973 Open in IMG/M
Scaffold IDGOS2217_10141974 Open in IMG/M
Source Dataset NameMarine microbial communities from Bermuda, Atlantic Ocean - GS001
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1884
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameBermuda, Atlantic Ocean
CoordinatesLat. (o)32.166668Long. (o)-64.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022000Metagenome / Metatranscriptome216Y
F060037Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
GOS2217_101419741F060037N/ATYTDADGNSQTITYTNNGPNKVNAIQVYNVNSGHTVFVTFKKKFVEPTAEDNTLAEIGLENEYEPIIMAGVAAQVMAGRDIPTATSDYITDQMSTTNFPVNSAANIRSSLLRYQGDLIEQARKDLRARYPEPVSLNKVTYA*
GOS2217_101419743F022000N/ALSQQSGTGGEEVQLQRVARYVTAKIELNGNGTSTPKFKSLQIRALARPELVVVQIPVNISDRVERPYRKPIRVKNLGETIYQSLKQKEGDAVTLELFDPAEIIRGVVEKISYPIISNPNIGSVTQYAILTVRGTRQQTFSQVTSGDIVGVNGFAIMRFG*
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