NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10456515

Scaffold Draft_10456515


Overview

Basic Information
Taxon OID3300001975 Open in IMG/M
Scaffold IDDraft_10456515 Open in IMG/M
Source Dataset NameBiogas fermenter microbial communities from the University of Hamburg, Germany
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location
Location NameUniversity of Hamburg, Germany
CoordinatesLat. (o)53.458783Long. (o)9.968812Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054970Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Draft_104565152F054970AGGMTKNTPEALKKIAEKLLVELYKNDDCDGWECSECPFRLDESEEDPRYGVHNCGWLLLKSATSKILRN*
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