NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10772785

Scaffold Draft_10772785


Overview

Basic Information
Taxon OID3300001975 Open in IMG/M
Scaffold IDDraft_10772785 Open in IMG/M
Source Dataset NameBiogas fermenter microbial communities from the University of Hamburg, Germany
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location
Location NameUniversity of Hamburg, Germany
CoordinatesLat. (o)53.458783Long. (o)9.968812Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072355Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Draft_107727851F072355N/AQVPGIRAAWHNLVFQLDLAKRRLDENGTASLQGIIFGVAGAVTALVVAVIVLGNLDTATRGTVDESSVYYTLLDTVGQYGSTAITLLAIGVIVAGAAAILYIIRGAF*
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