Scaffold Draft_10975668

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Draft_10975668

Scaffold Draft_10975668

Overview

Basic Information
Taxon OID	3300001975 Open in IMG/M
Scaffold ID	Draft_10975668 Open in IMG/M
Source Dataset Name	Biogas fermenter microbial communities from the University of Hamburg, Germany
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	518
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location
Location Name	University of Hamburg, Germany
Coordinates	Lat. (^o)	53.458783	Long. (^o)	9.968812	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_109756682	F003987	GGAGG	MIPALPCGSFPDGDIPVGAFYVAVFEDGDQTHHVGEYRIETLVRALRALQACGYDDVEVGGVEEGGKQHLLLIGLDGEARFGDRQLGCIAVLPVGVD*

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