NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_11049311

Scaffold Draft_11049311


Overview

Basic Information
Taxon OID3300001975 Open in IMG/M
Scaffold IDDraft_11049311 Open in IMG/M
Source Dataset NameBiogas fermenter microbial communities from the University of Hamburg, Germany
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)538
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location
Location NameUniversity of Hamburg, Germany
CoordinatesLat. (o)53.458783Long. (o)9.968812Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105431Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Draft_110493112F105431AGAAGGMDNDSTIKLIEKYGMHNRGKSKLISYLKGEHITRKEAIYAYCYDCQGYCEDGKVECDQTQCPLYMYSQFNKYNINKREKK*FL*

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