NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24752J21851_1006503

Scaffold JGI24752J21851_1006503


Overview

Basic Information
Taxon OID3300001976 Open in IMG/M
Scaffold IDJGI24752J21851_1006503 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080567Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
JGI24752J21851_10065031F080567AGGAGGMRKLLVVAFCLLTFGTVTMAQTKMETKWHCSKPTASHKFDVGDVPDHSYXIVQGTCAATSSTNGEKTGAFTEFQEVWKGSSKNHGQFNVTMDNGDITYYTYEASGPTDVKSPASNKWNISGGTGKHKDMKGSGVCSGTRHDDGSSDWLCTGTS*
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