NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24739J22299_10011653

Scaffold JGI24739J22299_10011653


Overview

Basic Information
Taxon OID3300001989 Open in IMG/M
Scaffold IDJGI24739J22299_10011653 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3242
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019547Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
JGI24739J22299_100116532F019547AGGGGGMSKTLFPRIAKCLIGTAFVLVLTAPSVAADGTPVVIRGTGRPAPAELNLAYEATFPNGALKPSLDKLNAGPMVPGDPLIPXSEPTVSAGQGDVVVSIHRPLDLSPDDIPSESLFTPVDFGPGSIVRIKATFIAPVGPYATTGGFAIGLGGRTGGKDDLSTETRVFTTINVRPNQLVKLQVPFGAVETTNMVLPQDVKDAIFSTTDPQPFTLELTIDRKLGKGTAKLMVIDQVFSLDFTLADFLADGGPVITNVGPGIAVNSNGPGQTASVHVREFRIYTE*
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