Scaffold GOScombined01_100089825

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOScombined01_100089825

Scaffold GOScombined01_100089825

Overview

Basic Information
Taxon OID	3300002040 Open in IMG/M
Scaffold ID	GOScombined01_100089825 Open in IMG/M
Source Dataset Name	GS000c - Sargasso Station 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1251
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Moorea, Outside Cooks Bay, Polynesia Archipelagos
Coordinates	Lat. (^o)	-17.475834	Long. (^o)	-149.81223	Alt. (m)		Depth (m)	1.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083771	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
GOScombined01_1000898252	F083771	AGG	MFRLPKFTSSYSVNAKNRMDVVIDGYIPELQMATEQKDFSNILYGRKVKRHKRWWHLTNYTNILQTEEEMGKFFTVEITNDTIKEDVVHVLKDRGLRRLEIKNDRIEVTVSRLSEDQKDIILSGIRRIAKQTKAAIDHITTDIDTRLEKAIDNQVVIPRKAYYIRRQLDATHKEYAGYIKFKELEACFKISRWTFKIPTEEDQACYDDWL*

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