NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOScombined01_102351332

Scaffold GOScombined01_102351332


Overview

Basic Information
Taxon OID3300002040 Open in IMG/M
Scaffold IDGOScombined01_102351332 Open in IMG/M
Source Dataset NameGS000c - Sargasso Station 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2032
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameMoorea, Outside Cooks Bay, Polynesia Archipelagos
CoordinatesLat. (o)-17.475834Long. (o)-149.81223Alt. (m)Depth (m)1.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023961Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
GOScombined01_1023513323F023961GAGGMPNYIETDMKHDKEFFKKYINGKWEDSNKLYKEYMSWENRKFFVQEIKDFDRPLLRKMKEIWNYLGIRPRDFRCNFFRVLPGGELPLHTDVLSKSSVVIPITEMTGPLYFDDGTEVLYQNMTVINTKKAHGVKAPTVERIVFHMGLHDIPFESIKINDK*
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