NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold SMTZ1_10001276

Scaffold SMTZ1_10001276


Overview

Basic Information
Taxon OID3300002052 Open in IMG/M
Scaffold IDSMTZ1_10001276 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24971
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (62.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093163Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
SMTZ1_1000127627F093163AGGAGMERKDPIERAYELIGQPIDPNLRCPVELADIVDYKESEPGETIEYFASDRSDVDDIYAADANGGLTLHKLTLGTPTALTFVGLQSKLEYVLIDEILNSKDQTALAAKKDGIIRAMDKEEVRRIFNVILAIASQEVTKDSGEDILDVIIKMKQKVSNYATDYILLVASDVMDEIEKYDKENANNFNYRLAIKEEIAKLGINKIVKVIGEVNSTAVLANGKAILVGRDSTLAQGRPIKMRRRKFSGEIAEMSGAEEGAVRLVSVARTPQIVNADGKNTLGYGTFGYESVIEVVTNYRAVCWADSLV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.