Scaffold JGIcombinedJ21915_10196322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ21915_10196322

Scaffold JGIcombinedJ21915_10196322

Overview

Basic Information
Taxon OID	3300002071 Open in IMG/M
Scaffold ID	JGIcombinedJ21915_10196322 Open in IMG/M
Source Dataset Name	Barrow Graham LP Ref core NGADG0011-312 (Barrow Graham LP Ref core NGADG0011-312,NGADG0011-212, ASSEMBLY_DATE=20131010)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	726
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.29053	Long. (^o)	-156.788654	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010068	Metagenome / Metatranscriptome	309	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ21915_101963221	F010068	AGGAGG	MNVKGTFYVLTKTAMITAFGEERWNSFMTKLAEKDKYFKNMIMSITLIPVEKLIIFFDEMCGEFFNNDRTSYLMFGKVGAKYALSPEGPYKAFMLTKDIKQFVEVYMPKLWMAFYDGGTVITKLENNIVHLKVTGINIKNLYFEQLIMGYNQQALKTFGKKSVVKKVRSIASGDDDIYFQFELKES*

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