NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ21915_10265796

Scaffold JGIcombinedJ21915_10265796


Overview

Basic Information
Taxon OID3300002071 Open in IMG/M
Scaffold IDJGIcombinedJ21915_10265796 Open in IMG/M
Source Dataset NameBarrow Graham LP Ref core NGADG0011-312 (Barrow Graham LP Ref core NGADG0011-312,NGADG0011-212, ASSEMBLY_DATE=20131010)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)589
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.29053Long. (o)-156.788654Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005327Metagenome / Metatranscriptome404Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ21915_102657961F005327GAGMIFGVNATKSAVVIAETKGAGDKFVITAIRPIPFQVRSGDDLAELRQSLIAIFDRHGRGAGSVIALLKCSSGRFGSCLEAIKGEAMIELAASQRGLRVVKVAPQSLKKTLGCATDQKWRDRAGELFNADGKHRNWSRGAAGAVAVAFKVA
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