NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ21914_10107907

Scaffold JGIcombinedJ21914_10107907


Overview

Basic Information
Taxon OID3300002072 Open in IMG/M
Scaffold IDJGIcombinedJ21914_10107907 Open in IMG/M
Source Dataset NameBarrow Graham LP Ref core NGADG0011-211 (Barrow Graham LP Ref core NGADG0011-211,NGADG0004-312, ASSEMBLY_DATE=20131005)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)850
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow, Alaska, USA
CoordinatesLat. (o)71.290565Long. (o)-156.788622Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021887Metagenome217Y
F042085Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ21914_101079071F042085GGAGGVPPADDEFRARFRDVLARSGLSMRALSAAMGRDPGYVAALLDPSRPSRARPTPADLLRASDATGIPLVELLEALWGIERSRLADELGRLGLGG
JGIcombinedJ21914_101079072F021887N/AMVTQMDSAVEPDSLAAFRRRRDGRDDLPALPLRPLIAEYTATFGSTWRPVTRRKHRDDFARLIAWLEANGKPVTTGSLDFMTLVDYVGYLRVRPKVSGVWRGGPDALGRSLRHAPVQTLSANSVNAYVRPLRSLVIWLVDEGLISQDPFRRSHRRAALNPLLPSEETPTKS
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