 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002091 Open in IMG/M |
| Scaffold ID | JGI24028J26656_1000160 Open in IMG/M |
| Source Dataset Name | Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29080 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (75.68%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brandenburg, Germany | |||||||
| Coordinates | Lat. (o) | 53.1666 | Long. (o) | 13.0333 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F011148 | Metagenome / Metatranscriptome | 294 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24028J26656_100016014 | F011148 | GGAG | MAVFAKNTLTQVSGFDNQIIAGELVYQQQTFWNLTLASDGIPVDLTDATIDAQIIRRKLSNVQDTRYGLSFDISDYVPTPDPISLTITNVNEATGQFTLVIDDSAWDLVVSPNDPDLDIASINGAGFSGRIKISFPAVGTTPANDLIIFLLFLVRSDAIVNN* |
| JGI24028J26656_100016021 | F002085 | N/A | MNPIVPLQNTNNIRIADFVRIINPSDTYLFSTAYTSLLIPAVDSQPFSALGPLVTIGDAQRDIKSTANETTVSVVGIDTAMLGWVLGQNIKGSKIEMWHGFFNTDGQLLDAGGTGGLYQFFNGYVTSFNISEQWFEEAKMYVGTITISASSNQLILQNRAAGRYTNNNSWQFYAPDDTSMSRVPVISTTNYYFGKNSPANS* |
| JGI24028J26656_100016022 | F000934 | AGG | MSLNQILAISETVAINDQRFVGQVVSRNQHIFTSEIVTVTPFVFTFKPMNYLLYSQNRGLLNSLRIPDKSLEQYLNFGTTGWKNYIQYQGDLTPSQISSCQWEPASAAKILVLGNLPTVSASTIIVKVGDFCQVGRYSYIATETVLRGSGTTVNIPVHRGLIDAVVSPINAVIGEFGTTVAMGGTTYTGITFPVILRSYPAYTLVPMTNDSFIQWSAQFSAFESVL* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |