Scaffold JGI24028J26656

Basic Information
Taxon OID	3300002091 Open in IMG/M
Scaffold ID	JGI24028J26656_1000283 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002091 Open in IMG/M

Scaffold ID

JGI24028J26656_1000283 Open in IMG/M

Source Dataset Name

Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18184
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18184

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.1666	Long. (^o)	13.0333	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brandenburg, Germany

Coordinates

Lat. (^o)

53.1666

Long. (^o)

13.0333

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F017591	Metagenome	239	Y
F027087	Metagenome / Metatranscriptome	195	Y
F103136	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_100028310	F103136	AGGA	MLDIKNVVVSNLNNTKGMMARFVKMKSLLDAKCAANLRLLATKNNINRASDYHYLNLAVTQSTEPVNGLDYIHPVVKPMVDYATAVVSKGLAQNGEINFEFVPDNEADDTAARQATNMVHKIVNQNNDPHFILQHWIMDAMLHKNGEMMVSPMRESFVRYVTTTGTADQLRAFEQQAAEAGLTALRQSRRKQTVDMSQVVKETQSFLNNIPGAQADEDLRARIEAARMGSEGEFEEMADVEPENIEQRDSQDEIDASIARNTIYEARYKLTGYTLNIKFRPIAQHYWMCDPTVIEIQEQPFCGFYKPCSIQEATELYPDINLDEFQVHAQYSNVGAYQAGSLLNNLALHARDSVPINGLPAQGYAAQDANSRQVTILTVWNRYDIDGDGELELIELIYSGNYVISAREVEFIPVANMVPKPLAQNFYGMSIAESVVPMQEYMTSGHRAEIQLGLLQSTSRIGVKPDKLDFEMIQDGEAAIFILDSKFDPAKDIYALPVPNGNISFIDQAMNRMQNDTMAMIGMTTPQDVFNPEVMDPGNSGAKLNLALSPNQIIQDNTVKNCAEGLKDALWLVWRTLIAHSDDYGVKKLAAEFSPDKKPVFLDAMSFDDMNFNDRKTIHIDLALGMKSEENSLQRLQIIKQAQTGLSQEVAAGVASNTLTPAAFKKLKKPYADMLYVLGIKDCDTYLPTDEEVMEMVQQAKAAQAQQQPSPKDQADVLATQAKANLDKIRAEQIQAEVAGNTADKQLEGYSLIKEHKARAYGP*
JGI24028J26656_100028312	F027087	N/A	MDDAAARQLADIRILQKVNAASREAFGVKYPGQVEHCLRLVMERLQAGLDKRDGVDVARTDTWRMSTVEILDLARSAQLLNDIRRGF*
JGI24028J26656_10002835	F017591	AGGA	MSTQIADANALVSYVEDFTGSSNNDEIKQCIYLAELMMRNIELPALRTNPYTTIGTANSDGYVPIPANMNKPILFFNNSSPSGPWIVYDRIGDRDIITQQLIENLYLNPINIPSVYRGKFGEVGQFYEFLPGLQPSSQVCMYYYTTWPLLFSLETDGTTVVLNNVVLQSFPEGYIYGTLHNYYLKRKMPEDAAYWRAKFDDAWNTIEDQNNKGKWSGGHNRLTSIFQPRRDQRYSVR*
JGI24028J26656_10002836	F010759	N/A	MSEFDHYQDSSELDGPDPEHNPDQYRQDRGGLVTAHNGIADRLLRNDALYNTLKGDWKRTDFNKSRNIRTTTGREDGKFYIQKEQFNTDYIVELCRAYRERAEAGYIDPLAPLMPDGTIGYKWMELPDVIAQDIGNKYFGGLGWQTIKRDKTMKAQFYRVVQQEYNDFICYPGGRLPIPIEVPYPAAVGQDKFFAGANFAGKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24028J26656_1000283

Overview

Ecosystem & Geography

Associated Families

Sequences