NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24028J26656_1000339

Scaffold JGI24028J26656_1000339


Overview

Basic Information
Taxon OID3300002091 Open in IMG/M
Scaffold IDJGI24028J26656_1000339 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16117
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033702Metagenome / Metatranscriptome176Y
F085178Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
JGI24028J26656_100033931F033702N/AMKYCKVCQKAIPEKRVQLGYSDTCVEHSNAFKYVGFVSGTNKVDYEISIIRDPETAMHMQKLAEMRGCA*
JGI24028J26656_100033938F085178N/AMNKREIPKAFFEPLEDIQASDLLDNEALLNMIKVETPLAIEEAFRNKKTFASLFEINGMGLYIDIPRPHWIAALEQCINFKLEEEKFEDCIKLRDLIEEIKKPIKRIPKKKENGTIAERDTDSN*
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