NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24028J26656_1000914

Scaffold JGI24028J26656_1000914


Overview

Basic Information
Taxon OID3300002091 Open in IMG/M
Scaffold IDJGI24028J26656_1000914 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7618
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F006264Metagenome / Metatranscriptome377Y
F012670Metagenome / Metatranscriptome278Y
F040590Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
JGI24028J26656_100091410F006264N/AVIEESAFQQRLSAQAEVCARKTLEWLQKDLQGDRKLLPQDVYYLASAADLLLTLRDMYGKK*
JGI24028J26656_100091412F004695AGGAMLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQATQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVNLQGVMQEMMAPEEGEEIPSSQQEEMDEAIKANTIYKAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTLHECKAQFPYVDLEKLSEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADKFSRVIMLTTAWIRKDVDNDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDPNKHVFQFQPMQGNLAYVESSMQRFEADKMAMIGMTSPSDVLNPEAMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAAVCSKGKPFMDAISMENYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFAALLAQLDPSVPELFTKLRRPFEDTLRVLGVKDVDAYLVTIEEAAKIAQAKSQQPPSAMDKETQSKTDLNNAKTQESQTVSALNMKKAEDIDTDNMFEALAAKRGKLSAVEID*
JGI24028J26656_100091413F003521AGGAMKSLVLNIRNYFNRRTRIADANKEADVNRKTLVIENGESASRLMKSEDFALLFNLYRFDLLSRLEECRTDPERIENAFNVAGVRDFIGFVEKTEYLGKVAQKSNT*
JGI24028J26656_10009144F001915AGGMEWTLSHPLHDVDDIVEMADSLFGTEADGILKRDRNVFRKNVTIASTVQLFDKGREFLAVCREYDIARDTQKLLGYCWFDRGGYTTYSNEEISNAKFHHVDLTLPIRTRVRLINEMIDQHILWAYTWGIPVICSTSIRAEHDGFMKIHKKRGFEVNGSYAWVKTENAIKGLK*
JGI24028J26656_10009145F012670AGGAMKMPNKNDVIFGDVRPEGTEVSDEEQKARARQFYQLKKAEKKAMRLATGQHLPEETKPMASPHPAGRPKSIVNRVTEYGALFNKLNDERAAKGLSPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVSKEEEVSADDALDDFLQALRKV*
JGI24028J26656_10009148F040590N/AMSAYGKVISGGKQMTAGLTKGINKKLDAFADSHKRSKMLAVAVRDTFNQNPLSDPHHNNSNGSKFTTPKLPTKV*
JGI24028J26656_10009149F001059AGGAMATYDIDALKADLPTAKELAQFIYDKVGLSLDFVGKPKEDQYLVAKNALEGKKIPQDYMTELNPYIDRKETIPMDELKPLPPRPADLPSKDAQIHFFGATNMPHPSDPQSDRKVQINFRKYENGLITFQIMGPVEQQAVGSRLNKFGQNVPEKYEWLDPRTEETVMKRADGTYTEKGRGLHSYCAGEKGGGIWSLIDRNPTEISQKNVVDPWA*

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