Scaffold JGI24028J26656_1002711

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24028J26656_1002711

Scaffold JGI24028J26656_1002711

Overview

Basic Information
Taxon OID	3300002091 Open in IMG/M
Scaffold ID	JGI24028J26656_1002711 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3181
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (166.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cattleya	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.1666	Long. (^o)	13.0333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_10027112	F080791	AGGAG	MATYIYNGDGEKEFPTLGLTVKNGDTFDSADEIINADVTLASATKKTTPTPAAPSATTQGA*
JGI24028J26656_10027113	F002722	AGGA	MAVGRTQLRSTLYNYLTGASIDTLNQIFTSFPKRINFQVNATAGQLSRAALVIFIQSERETRLAIGGATSGWKRVDFTVVLQVFHHSVQNNSEDAMTDFDTLTDNIKNTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETWAEIRFDVTQMIQA*

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