NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24028J26656_1008845

Scaffold JGI24028J26656_1008845


Overview

Basic Information
Taxon OID3300002091 Open in IMG/M
Scaffold IDJGI24028J26656_1008845 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1301
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (166.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004448Metagenome / Metatranscriptome437Y
F016248Metagenome248Y
F078713Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
JGI24028J26656_10088453F016248GGAGMKEMSQLQRQLLGQEHVKFFTQQEFDGELAIAKAEIMAVAIETTKRAIMIEREECAKLADECVDIEKLGEAIRNRIPTQRQ*
JGI24028J26656_10088455F078713AGGAGMNKIIPAKDVGASIWKIIEEVANEYPEEEREELKAVMLGQLGMALFAGPVEKEEKHDRP*
JGI24028J26656_10088456F004448AGGAGGMTGREIMINFIRDILRPKTLEEIISKEMREAYISKMEAEKALEYATSVVEYNRNRIRRLEERLKDLDRGKPQ*
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