NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24218J26658_1001999

Scaffold JGI24218J26658_1001999


Overview

Basic Information
Taxon OID3300002092 Open in IMG/M
Scaffold IDJGI24218J26658_1001999 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5585
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.152741Long. (o)13.022518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029327Metagenome188Y
F050111Metagenome145Y
F074332Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
JGI24218J26658_10019996F050111AGGAGMEKKSLYNIQMTMKPEDIMTFVSGLHDIQKDMIETVVVRKEREGFPEATAVIEHIRNLPRPVDGSKLGPRK*
JGI24218J26658_10019998F029327GGAGGMGFYKNIEIEIMEWQARGRSVEDTYIYFKDYATHKDVVRIFARDCDEKTV*
JGI24218J26658_10019999F074332AGGAGMTQNHLAQYTVEELQGYFSDFHKDYYGMRPRFATPEQWRDRSWLESQINCIHDAMDAMKKTFSGREQLRAEGWVIDEADFADMIDPEEYARWSADADAVAYGEAQ*
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