Basic Information | |
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Taxon OID | 3300002098 Open in IMG/M |
Scaffold ID | JGI24219J26650_1003825 Open in IMG/M |
Source Dataset Name | Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3417 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (92.86%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Brandenburg, Germany | |||||||
Coordinates | Lat. (o) | 53.152741 | Long. (o) | 13.022518 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006587 | Metagenome | 369 | Y |
F023292 | Metagenome | 210 | Y |
F049426 | Metagenome | 146 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI24219J26650_100382510 | F023292 | N/A | MGYLCILIACHGVKMNIDEVKEVVRVQVKNYRVKDILDKFDDSEWLTLYEQIMRYKPYETERRLIDYARTELEFFRYVLYTERHYEDLLIDKACIECLKCEDVCLSERKYYVRRPKNT* |
JGI24219J26650_100382511 | F049426 | AGGA | MKTKAIYKNYEREIYMSEYVTIPKDRYRRXIVSEVIAWGISVFLLLVMVLR* |
JGI24219J26650_10038255 | F006587 | GGAGG | MDKDYKGTGFIIVGFIMGALLTWAIMQSIHVQKKYSMNLKCVQGELYEEIRPNFYVKSHLECFEQRSF* |
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