Scaffold JGI24219J26650_1004613

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24219J26650_1004613

Scaffold JGI24219J26650_1004613

Overview

Basic Information
Taxon OID	3300002098 Open in IMG/M
Scaffold ID	JGI24219J26650_1004613 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2945
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.152741	Long. (^o)	13.022518	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005200	Metagenome	408	Y
F017776	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24219J26650_10046133	F005200	N/A	MDPITIFAACKAAHAGIRXCXDLYQDFKKDGKDVGDIVGDIGKNLGSFFTHQETLKEAEKEEKLKPLDKKTSINEEAMNRIMRQEQIQRMETELREMIIYQVGMPGLWSKFVDMREVVRKEREKIEREQKKPLNWLHSRGGSSLINGKSGQHYALAF*
JGI24219J26650_10046136	F017776	N/A	TLSTTLVNNIMAYLGTRPFQEVFQLIQEVQKEAQAQQPEISNPSLQ*

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