Scaffold JGI20170J26628_10065249

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20170J26628_10065249

Scaffold JGI20170J26628_10065249

Overview

Basic Information
Taxon OID	3300002119 Open in IMG/M
Scaffold ID	JGI20170J26628_10065249 Open in IMG/M
Source Dataset Name	Nasutitermes corniger P3 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1604
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	laboratory colony in Florida, USA
Coordinates	Lat. (^o)	26.0625	Long. (^o)	-80.2332	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084827	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20170J26628_100652492	F084827	GAG	MDLSSKFRMISSCEQIKISALKQNVLYPIERAERVQTKYGETVLVTLRAESPQTFLKVFLPRRYGVLFSDEELRHINEKTISLSLKYRGTNTATNSYILEIE*

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