NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20165J26630_10763473

Scaffold JGI20165J26630_10763473


Overview

Basic Information
Taxon OID3300002125 Open in IMG/M
Scaffold IDJGI20165J26630_10763473 Open in IMG/M
Source Dataset NameCubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004007Metagenome457Y

Sequences

Protein IDFamilyRBSSequence
JGI20165J26630_107634731F004007N/AEGRGEMAVLPAVTAVLLHHNAMDILTEGNVVSTG*
JGI20165J26630_107634732F004007AGGLLVQGRGEMAVLPAVTAVLLHHSAMDILTEGNVVSTG*
JGI20165J26630_107634733F004007AGGLLVQGRGEIAVLPAVTAVLLHHSAMDIWTEGKVVSRG*
JGI20165J26630_107634735F004007GAGGLLVQGRGKMAVLPAVTAVLLHHSAMDIWTEGNVVSTGQRGNGGSA
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