NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold CSTRM48_1001210

Scaffold CSTRM48_1001210


Overview

Basic Information
Taxon OID3300002130 Open in IMG/M
Scaffold IDCSTRM48_1001210 Open in IMG/M
Source Dataset NameWastewater microbial communities from Belvaux, Luxembourg - M48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4796
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Methanogenium → unclassified Methanogenium → Methanogenium sp. MK-MG(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Belvaux, Luxembourg

Source Dataset Sampling Location
Location NameBelvaux, Luxembourg
CoordinatesLat. (o)49.506095Long. (o)5.943536Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033857Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
CSTRM48_10012103F033857AGGCGGMVVIHDLSTLSPEPVIVRIGNGDEIEEIDLTIVPARGTLLLSEATQRHGGWDKIPDDEMIPAIAAICRQSNPRITAEWLETKLTRPQLAGLTQVILAQAFRPWGNQKKDDKEQDAGEKNR
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