NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t2BS1_1449240

Scaffold M2t2BS1_1449240


Overview

Basic Information
Taxon OID3300002131 Open in IMG/M
Scaffold IDM2t2BS1_1449240 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS1 (111f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)121401
Total Scaffold Genes156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)136 (87.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011889Metagenome / Metatranscriptome286Y
F088934Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
M2t2BS1_1449240106F088934AGGAMEGIQIERLKKDKNEAMYYRKRLIKKGKDVLAYKMAKKIEHLDYHINQMETFTGGAYH*
M2t2BS1_144924012F011889AGGAMNITIELTETQEKALAYVAVSPQEWAENVVHNRCRIAIDEIYTMEVARMTADPDITSIPADKDTVVLAADIQSAAERNASQQENLIG*

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