NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t6BS2_1125627

Scaffold M2t6BS2_1125627


Overview

Basic Information
Taxon OID3300002132 Open in IMG/M
Scaffold IDM2t6BS2_1125627 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t6BS2 (105f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21892
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (65.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047691Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
M2t6BS2_112562735F047691AGGMKCEQGDLAKIIYSLNPSNIGKIVIVESYIGKFNQRDTFFFKGITCMCPVTDHYWWIAGDGLNNNFGDTPKAYIADTWLEPIRPDIQKMSVDEKIDIDIAA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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