Scaffold JGI24538J26636_10038881

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24538J26636_10038881

Scaffold JGI24538J26636_10038881

Overview

Basic Information
Taxon OID	3300002154 Open in IMG/M
Scaffold ID	JGI24538J26636_10038881 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the South Atlantic Ocean - 30m ANT-15 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1156
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	78.8697	Long. (^o)	8.1122	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083771	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24538J26636_100388811	F083771	N/A	MDVVIDAYIPELRMATEHKDFSNILYGRKVKRHKRWWHLTNYTNILQTEEEMGKFFTVEITNDTIKEDVVHVLKDRGLRQLEIKNDRIEVTVSRLSEDQKDIIISGIRRIAKQTKSAIDHIARDTDARLEKAIENQVVIPRKAYYIRRQLDATHKEYAGYIKFKEFEACYKISRWTFKIPTEEDQACYDDWLSRQKVAEQAVQNKSASEM*

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