NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24766J26685_10000155

Scaffold JGI24766J26685_10000155


Overview

Basic Information
Taxon OID3300002161 Open in IMG/M
Scaffold IDJGI24766J26685_10000155 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17524
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (75.00%)
Novel Protein Genes22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Associated Families22

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000450Metagenome / Metatranscriptome1126Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001019Metagenome / Metatranscriptome804Y
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F002387Metagenome / Metatranscriptome565Y
F003603Metagenome / Metatranscriptome477Y
F004666Metagenome / Metatranscriptome428Y
F010248Metagenome / Metatranscriptome306Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y
F017101Metagenome / Metatranscriptome242Y
F024786Metagenome / Metatranscriptome204Y
F026195Metagenome / Metatranscriptome198Y
F035764Metagenome / Metatranscriptome171Y
F039131Metagenome / Metatranscriptome164Y
F061853Metagenome / Metatranscriptome131Y
F092053Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
JGI24766J26685_1000015512F092053AGGMKLSSEVKEDLQDQADQIIYFESAMSNEDKASKAVYQRLVEIYKVAYEAGVNSK*
JGI24766J26685_1000015513F000263AGGAGMIPDTLELPAHLQRMVDAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARNEA*
JGI24766J26685_1000015515F000441AGGAGGMKMSDPYIDEQLSKAQKLLWGGSETENIEAHNIISKLIRDRMSEQEGQNV*
JGI24766J26685_1000015516F001019AGGAGGMSNYGPSLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDIPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMREMLDNL*
JGI24766J26685_1000015517F024786GAGGLTTYRVFGTKYHNYYTIIDAADQFEAVDMANKLEAHNWFEIATDDVIEATDVYLNEDTSMDVQLNI*
JGI24766J26685_1000015518F004666GGAMTTKREYLATKGITVGKRGRFSSAANKALQDAAAQGVTFESEKPQPKK*
JGI24766J26685_1000015519F003603AGGCGGMQSKEHKLGELLANSVEDHFFNPAALGRYLAEQPVYTVDRVIEVVAWIIEKQAERYRREVANNGTISEGLIIANMLDKVIDKIKISNDLKHVQLPITPKERGEFIKDLPEIQEQNYRYSWLHETNNGSNANINVTPTL*
JGI24766J26685_1000015522F026195AGGAMMGFLDNLEEWLDFEEEIDKDPEIGYSTGKWSDDDDIHPTITPFISPIR*
JGI24766J26685_1000015525F035764AGGMIDWLVNRLFWWTPLRNALLAEATFYNSMTTLLNDPESMKTATAYWNEGDGWRGWTIEDNKYYFNDVPEYDMLSAWEALDEMTDGQRPL*
JGI24766J26685_1000015529F061853N/AMNKKTITLIGLLVALVAVAFAAYNSFSQLKDIDYDLFETEDEDDD*
JGI24766J26685_1000015532F001176GAGVSDNGTGMTTPPNNQPSGAVTSQEAGRKNPSQGKFKSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV*
JGI24766J26685_1000015533F001280AGGAGMCIECGCESVGSESGIETILGGMLNVSTDGEAGLTLNMTATPEQRERFISGE*
JGI24766J26685_1000015536F039131N/AMIEYTMAQDEVYELEGYFERKYKKQIMDQINNFEFPNEWTPKQVVDYITYKIDRK*
JGI24766J26685_100001554F000311GGAGMYFELTAPDRLSMERAYWDAQMMGLDPQALTPLTFNIGTGSIEKVSRIRDKYNLTESYTSDYEPTGYTGR*
JGI24766J26685_1000015541F017101AGGAGMESNEKRMSILESIIQDVARALFQKWANGLPEENRSEEALANLNKNAIDSTYFVVKMFMDQFNAAADELKAQPDEQ*
JGI24766J26685_1000015543F010248N/AMEMLRMQFQIEYLNTAVRLLLDEAKVTGPEMDAGKWYNAKLNKDK*
JGI24766J26685_1000015547F000671GAGGMEKILCYSCNKSKNKLDVKRSSLLPINLLVCESCSSAKLEPRWVVILAGRSNGPDHVRDFIVKRKYLGNEITASELLI*
JGI24766J26685_1000015548F011938GGAGGVREYYDTTHIVFIHSEQCYGTVEKLGAWASIVKYDNDGIEYNELMENEEFTIVDEIVFKHVEESN*
JGI24766J26685_1000015549F000473AGGMFIDKSNDKLKEHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDIVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVTKVKRLIESYGVRCELEGKPSERVL*
JGI24766J26685_1000015551F013878AGGAMLNLTELGVEVFIKRAKNITPYWDNYDLIIWKKDNSGFTNIKGMFRENAWGTAERIAVNDNGIWKLPAKYVRNFK*
JGI24766J26685_100001557F000450GGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWGSETGWGLHVNEIGDNEHKVAIIDFEQQTFSLHEEAPRNDKDNKVSGMSNQAIFTMDLSNFVEKYADVVISV*
JGI24766J26685_100001559F002387GAGGMSDPHGIIGHYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDKFIYYEFNKFYNLKEGDEDYLC*
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