NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24766J26685_10001038

Scaffold JGI24766J26685_10001038


Overview

Basic Information
Taxon OID3300002161 Open in IMG/M
Scaffold IDJGI24766J26685_10001038 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8136
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F017972Metagenome237Y
F037113Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
JGI24766J26685_1000103812F001477AGGAGGVNNIYTIHPKKSDLILLYEVVDENGDTEWGGENAEHCMQWLSLAPSNSRVLVSAWDSDEEDAHLVGQTIDITEIVRAASL*
JGI24766J26685_1000103814F017972GGAGGVRTRHLQLVSQEHSVTTRTRSIVSSPYGPVSPGSTTLLAQETLRANQEARLLELLSSLESVVENLNYKSFTAYDTLVIATEGVRAALSAIVTDEAGTE*
JGI24766J26685_100010388F003212GGAMKDKYLVTLEIDTYDGDPRLWDWQILLGHEDTSKIISSEYKGRVLSTKESEGEGNE*
JGI24766J26685_100010389F037113GGAGMSKWTVWVGGSEINWQHYAYKIDAERIAEFWREVKGYDDVVVEEIA*
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