Scaffold JGI24707J26582_10066690

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24707J26582_10066690

Scaffold JGI24707J26582_10066690

Overview

Basic Information
Taxon OID	3300002163 Open in IMG/M
Scaffold ID	JGI24707J26582_10066690 Open in IMG/M
Source Dataset Name	Biogas fermentation microbial communities from Germany - Plant 1 DNA1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1219
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. AM45-5	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location Name	Bielefeld, North Rhine-Westphalia, Germany
Coordinates	Lat. (^o)	52.0385	Long. (^o)	8.4956	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24707J26582_100666904	F014003	AGGAGG	MRTVFNKAKVKSWIKKAHKHHLFGYGHGYITDGYAMLVDEPHMHPTILEVFGTLTPECKHSAEQFERLMRLPNKPIEVIDSRLEFILEPKRQLRILYDPKTGKELAVNSMYFDLLNNPEACTFHTNELMSMLWIVYDNETVGVIAPYRLEDRERSHP*

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