NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24713J26584_10006163

Scaffold JGI24713J26584_10006163


Overview

Basic Information
Taxon OID3300002166 Open in IMG/M
Scaffold IDJGI24713J26584_10006163 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 4 DNA1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6630
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014003Metagenome / Metatranscriptome266Y
F057301Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
JGI24713J26584_100061637F014003AGGAGGMKVVFNKAKVKSWIKKAHKHHSFGYGHGYITDGYVMLVDEPHMRPTILEVCGTLTPECKYTAEQFEKMAELPYPAIEVIDSRLEFVLEPKRRLRIFYDPKTGEKLTVNSAYFDLLDNPEEHRFYANTLKSTLWIVHNDKTVGVVAPFNLQEQLSHISFKTEGVR*
JGI24713J26584_100061638F057301AGGAGGMRDSIPGIPTPFGTPKDNDDEFSVNLSEAPTGGGYLIPDGDYPAVLVDLRKGFSKSGNPQWIWTFAIMSGEHAGKEFPLFTAIIPSALWKVAETVEALGLGKGGTVSKFTKSEALSRRCIISIRKDTYNGQERSSIVKVLPHPDGPGPVTGFNPRKASDNPVPF*

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