NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24713J26584_10048877

Scaffold JGI24713J26584_10048877


Overview

Basic Information
Taxon OID3300002166 Open in IMG/M
Scaffold IDJGI24713J26584_10048877 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 4 DNA1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057301Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
JGI24713J26584_100488772F057301AGGAGGMRDSIPGMPTLFGAPKDNDDEFSVDLSEAPVGGGYLIPDGDYPAVLVDLRKGFSKNGNPQWVWTFAIMGGEHAGKEFPLYTAIIPSALWKVAETVEALGLGKGGTMSKFTKSXALSRRCIINIRKDTYNGQERSSITKVLPHPDGPGPVTGFNPKKVSDNPVSF*

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