NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24712J26585_10006526

Scaffold JGI24712J26585_10006526


Overview

Basic Information
Taxon OID3300002168 Open in IMG/M
Scaffold IDJGI24712J26585_10006526 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 3 DNA2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8316
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018909Metagenome / Metatranscriptome232Y
F029085Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
JGI24712J26585_100065261F018909AGGGGGMKWIKTAIGAVIAISVIPMVVNTIADLTGESGALAGTVAGTLLDLAPIVFVAGVLSFLFLKTGSRD*
JGI24712J26585_1000652618F029085GGAVKDVKNDKLKIDELLEENINEQLESGSPDLVSLIAISELTNLDKLKVITRLKDEQVPMLSKLYLFAECFNIPFMKNLADNILQLQISIRGLGRKELVNIVRESTPPETKRGLFERKDVFR

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