NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24711J26586_10034633

Scaffold JGI24711J26586_10034633


Overview

Basic Information
Taxon OID3300002170 Open in IMG/M
Scaffold IDJGI24711J26586_10034633 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 3 DNA1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1863
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004383Metagenome / Metatranscriptome440Y
F031138Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
JGI24711J26586_100346331F004383GGAGGVTGDILERAFMARIRADEYREDLAALQQEFDERPDVLDLKRRIERCEEERRQAIAKAKAAGITKQGSFLLKIRTRKQRTVIPERFFARFGAEAFVRCSTVAIGKAEALLGKGTFDDCCEVEVKDLGATVEYVRPGVSE*
JGI24711J26586_100346334F031138GAGMTKRYTYVGPCATACKPGAGTDAQKGTFDRIIVAAAEHAAREAGLPGRADRMIACRSCGAPTASSDGICRDCADAMRAERSEALSALCRVHRVRYVEDLPVSALEEMQVEWGRC*
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