NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24711J26586_10088240

Scaffold JGI24711J26586_10088240


Overview

Basic Information
Taxon OID3300002170 Open in IMG/M
Scaffold IDJGI24711J26586_10088240 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 3 DNA1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)872
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092293Metagenome / Metatranscriptome107N
F092294Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
JGI24711J26586_100882401F092294N/AMSCGEKSNAFANLHDVTLQRLDVYHRNNGRYVFYDSKHFAPTVDHWNTVPVIYVETEPGKPAEHPRFEDVASGNLPAKFRTVGSVSAAHLTEIGEKVLKGAIVFSDPAIAAKANAGELSLSTGLASPEAPDPRLPGATRIAGPVTPNHILVFDRGACPN
JGI24711J26586_100882402F092293N/ARPPTLTDRQIQIIRENLDLFPADILKLPEFADTNVTRHTIRNYQRRLKNATLPDDEEDLLVRLKRYMDRYGLESRFHGPRGVTGFITHLEKQIDLRAIERGNSENSAV*

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