Scaffold JGI24732J26686_1019926

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24732J26686_1019926

Scaffold JGI24732J26686_1019926

Overview

Basic Information
Taxon OID	3300002171 Open in IMG/M
Scaffold ID	JGI24732J26686_1019926 Open in IMG/M
Source Dataset Name	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1372
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location Name	Espanola, New Mexico, United States
Coordinates	Lat. (^o)	35.9918	Long. (^o)	-106.0796	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038519	Metagenome	165	Y
F060548	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24732J26686_10199261	F060548	AGGAG	MSTVTNRPKQRKVTDFVDRQVATLIKDHAGEDLCIEDLVDAARRDMPNFEWTNDKIRHSVTRLEKKRL
JGI24732J26686_10199264	F038519	N/A	KMYAIDYAGGEDAAGPYTNEVLLQKTLEIIRQIDPDAEIISRECNPWSEQILAGLLPFRIHVDLVDGMPQLPAEVSITWPPSSIEGIQVGNLEFREYFVWAESEKAALRKLATLNKAVQSYSPKAATAEEL*

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