NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20166J26741_11778160

Scaffold JGI20166J26741_11778160


Overview

Basic Information
Taxon OID3300002175 Open in IMG/M
Scaffold IDJGI20166J26741_11778160 Open in IMG/M
Source Dataset NameCubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)992
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004007Metagenome457Y
F008821Metagenome327Y

Sequences

Protein IDFamilyRBSSequence
JGI20166J26741_117781601F004007N/AAMLLVQGRGEMAVLPAVTAVLLHHSAMDIWTEGYNVSTG*
JGI20166J26741_117781602F008821AGGAVQLLQYCYTTVLWIYGLRAILLVQGRGEMVVLPVVTEVMIYHSAMDIWTEGNVVSTG*
JGI20166J26741_117781603F008821GGCGGMQLLQYCYITVLWIYGLRAMLLVQGRGDMAVLPAVTTGLLHHSAMDIWTEGYNVSTG*
JGI20166J26741_117781605F004007GGAMLLVQGRGEMAVVPAVTAVLLHHSAMDIWTEGYDVSAG*
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