Scaffold JGI24670J26820_11492494

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24670J26820_11492494

Scaffold JGI24670J26820_11492494

Overview

Basic Information
Taxon OID	3300002181 Open in IMG/M
Scaffold ID	JGI24670J26820_11492494 Open in IMG/M
Source Dataset Name	Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	850
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Zanca-sant'andrea, Tuscany, Italy
Coordinates	Lat. (^o)	42.8072	Long. (^o)	10.1411	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000096	Metagenome	2320	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24670J26820_114924942	F000096	N/A	RLTDTDLCPCGKTQTMSHIVESCPLTKLNGGLSWLLSADEDAVLWLTNYGS*

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