NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20163J26743_10952078

Scaffold JGI20163J26743_10952078


Overview

Basic Information
Taxon OID3300002185 Open in IMG/M
Scaffold IDJGI20163J26743_10952078 Open in IMG/M
Source Dataset NameCubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Kalotermitidae → Cryptotermitinae → Cryptotermes → Cryptotermes secundus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000030Metagenome5002Y
F075413Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
JGI20163J26743_109520781F000030N/AVSQEEWTKLREGVPYVKVYHYNPKHLYPKLNGYGDNGKRSLK
JGI20163J26743_109520782F075413N/AMQQRFSLQILLLAQHVLGTTMPIKSIIQWLLLPVVFRAVVFKLLVWCRAEGYVSGLQDAAASSNRTHNPQLRTRPAT*

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