NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M1t6BS2105N_1161161

Scaffold M1t6BS2105N_1161161


Overview

Basic Information
Taxon OID3300002224 Open in IMG/M
Scaffold IDM1t6BS2105N_1161161 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea - M1t6 BS2 (105N)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterKarolinska Institutet
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1553
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.133Long. (o)10.0Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057667Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
M1t6BS2105N_11611613F057667N/AMEDIILNHWQSILFALLIAARAIFSLIPSDSQAVKIFGWIDIVITALVGGDRRKNKNKKKAK*

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